Small subunit rDNA primer sequences | ssu ref. | nb pb | |
BMB-'A' (Lan) | GWA TTA CCG CGG CKG CTG | 583-566 | 18 |
BMB-'B' (Lan) | CCG TCA ATT CMT TTR AGT TT | 1147-1128 | 20 |
BMB-'C' (Lan) | ACG GGC GGT GTG TRC | 1641-1637 | 15 |
BMB-BR (Lan) | CTT AAA GGA ATT GAC GGA A | 1131-1149 | 19 |
BMB-CR (Lan) | GTA CAC ACC GCC CGT CG | 1637-1643 | 17 |
nssu97a (Kau) | TAT ACG GTG AAA CTG CGA ATG GC | 75-97 | 23 |
nssu97b (Kau) | CGG TGA AAC TGC GAA TGG C | 79-97 | 19 |
nssu634 (Kau) | CCC CAG AAG GAA AGI CCC GIC C | 705-684 | 22 |
nssu897R (Kau) | AGA GGT GAA ATT CTT GGA | 897-914 | 18 |
nssu1088 (Kau) | TGA TTT CTC GTA AGG TGC CG | 1088-1069 | 20 |
nssu1088R (Kau) | CGG CAC CTT ACG AGA AAT CA | 1069-1088 | 20 |
nssu131 (Kau) | CAG TTA TCG TTT ATT TGA TAG TAC C | 107-131 | 25 |
NS1 (Whi) | GTA GTC ATA TGC TTG TCT C | 20-38 | 19 |
NS2 (Whi) | GGC TGC TGG CAC CAG ACT TGC | 573-553 | 21 |
NS3 (Whi) | GCA AGT CTG GTG CCA GCA GCC | 553-573 | 21 |
NS4 (Whi) | CTT CCG TCA ATT CCT TTA AG (sim. to BMB-b) | 1150-1131 | 20 |
NS5 (Whi) | AAC TTA AAG GAA TTG ACG GAA G (sim. to BMB-BR) | 1129-1150 | 22 |
NS6 (Whi) | GCA TCA CAG ACC TGT TAT TGC CTC | 1436-1413 | 24 |
NS7 (Whi) | GAG GCA ATA ACA GGT CTG TGA TGC | 1413-1436 | 24 |
NS8 (Whi) | TCC GCA GGT TCA CCT ACG GA | 1788-1769 | 20 |
NS17 (Gar) | CAT GTC TAA GTT TAA GCA A | 54-72 | 19 |
NS18 (Gar) | CTC ATT CCA ATT ACA AGA CC | 516-497 | 20 |
NS19 (Gar) | CCG GAG AAG GAG CCT GAG AAA C | 381-402 | 22 |
NS20 (Gar) | CGT CCC TAT TAA TCA TTA CG | 871-852 | 20 |
NS21 (Gar) | GAA TAA TAG AAT AGG ACG | 802-819 | 18 |
NS22 (Gar) | AAT TAA GCA GAC AAA TCA CT | 1312-1297 | 20 |
NS23 (Gar) | GAC TCA ACA CGG GGA AAC TC | 1184-1203 | 20 |
NS24 (Gar) | AAA CCT TGT TAC GAC TTT TA | 1769-1750 | 20 |
SR1 (VilU) | ATT ACC GCG GCT GCT (similar to BMB-'A') | 581-567 | 15 |
SR1R (Vil0) | TAC CTG GTT GAT TCT GC | 21-1 | 21 |
SR2 (Elw) | CGG CCA TGC ACC ACC | 1277-1263 | 15 |
SR3 (VilU) | GAA AGT TGA TAG GGC T | 321-306 | 16 |
SR4 (VilU) | AAA CCA ACA AAA TAG AA | 841-825 | 17 |
SR5 (VilU) | GTG CCC TTC CGT CAA TT | 1155-1139 | 17 |
SR6 (VilU) | TGT TAC GAC TTT TAC TT | 1763-1747 | 17 |
SR7 (VilU) | GTT CAA CTA CGA GCT TTT TAA | 637-617 | 21 |
SR7R (VilU) | TTA AAA AGC TCG TAG TTG AAC | 617-637 | 21 |
SR8R (VilU) | GAA CCA GGA CTT TTA CCT T | 732-750 | 19 |
SR9R (Elw) | YAG AGG TGA AAT TCT | 896-910 | 15 |
SR10R (VilU) | TTT GAC TCA ACA CGG G | 1181-1196 | 16 |
SR11R (Spa) | GGA GCC TGA GAA ACG GCT AC | 389-408 | 20 |
1 (DeP) | GCT CTT TCT TGA TTT TGT | 1241-1258 | 18 |
3 (DeP) | TTT GAG GCA ATA ACA GGT | 1410-1427 | 18 |
4 (DeP) | CAT CTA AGG GCA TCA CAG | 1445-1428 | 18 |
5 (DeP) | TTG TCT CTG TCA GTG TAG | 1482-1465 | 18 |
6 (DeP) | CAA CGA GGA ATT CCT AGT | 1566-1583 | 18 |
9 (DeP) | AAT GAT CCT TCC GCA GGT | 1797-1780 | 18 |
Large subunit rDN primer sequences | lsu ref. | nb pb | |
GUADET P1 (Gua) | GAG TCG AGT TGT TTG GGA ATG CAG C | 275-300 | 25 |
GUADET P2 (Gua) | GAA AAG AAC TTT GAA AAG AGA GTG AA | 379-403 | 26 |
GUADET P3 (Gua) | CCC GTC TTG AAA CAC GGA CCA AGG | 661-685 | 24 |
P2R (Reh) | CTC TCT TTT CAA AGT TCT TTT CAT CT | 1412-1396 | 17 |
LR0R (VilU) | ACC CGC TGA ACT TAA GC | 26-42 | 17 |
LR0R (Reh) | GTA CCC GCT GAA CTT AAG C | 24-42 | 19 |
LR1R (Mon) | AGG AAA AGA AAC CAA CC | 57-73 | 17 |
LR2 | TTT TCA AAG TTC TTT TC | 395-379 | 17 |
LR2R | AAG AAC TTT GAA AAG AG | 382-398 | 17 |
LR3 (Vil0) | GGT CCG TGT TTC AAG AC | 677-661 | 17 |
LR3R | GTC TTG AAA CAC GGA CC | 664-680 | 17 |
LR4 | ACC AGA GTT TCC TCT GG | 887-871 | 17 |
LR5 (Vil0) | ATC CTG AGG GAA ACT TC | 997-981 | 17 |
LR5R (VilU) | GAA GTT TCC CTC AGG AT | 981-997 | 17 |
LR6 (Vil0) | CGC CAG TTC TGC TTA CC | 1173-1157 | 17 |
LR7 (Vil0) | TAC TAC CAC CAA GAT CT | 1483-1467 | 17 |
LR7R (Vil0) | AGA TCT TGG TGG TAG TA | 1465-1481 | 17 |
LR8 | CAC CTT GGA GAC CTG CT | 1917-1901 | 17 |
LR8R | AGC AGG TCT CCA AGG TG | 1901-1917 | 17 |
LR9 | AGA GCA CTG GGC AGA AA | 2292-2276 | 17 |
LR10 | AGT CAA GCT CAA CAG GG | 2508-2492 | 17 |
LR10R | GAC CCT GTT GAG CTT GA | 2490-2506 | 17 |
LR11 | GCC AGT TAT CCC TGT GGT AA | 2919-2900 | 20 |
LR12 (Vil0) | GAC TTA GAG GCG TTC AG | 3221-3204 | 17 |
LR12R (VilU) | CTG AAC GCC TCT AAG TCA GAA | 3205-3225 | 21 |
LR13 | CAT CGG AAC AAC AAT GC | 3464-3448 | 17 |
LR14 | AGC CAA ACT CCC CAC CTG | 2701-2694 | 18 |
LR15 | TAA ATT ACA ACT CGG AC | 161-145 | 17 |
LR16 (Mon) | TTC CAC CCA AAC ACT CG | 716-700 | 17 |
LR17R | TAA CCT ATT CTC AAA CTT | 1066-1083 | 18 |
LR20R | GTG AGA CAG GTT AGT TTT ACC CT | 3058-3080 | 23 |
LR21 | ACT TCA AGC GTT TCC CTT T | 442-424 | 19 |
LR22 | CCT CAC GGT ACT TGT TCG CT | 371-352 | 20 |
F377 | AGA TGA AAA GAA CTT TGA AAA GAG AA | 375-400 | 26 |
R377 | CTC TCT TTT CAA AGT TCT TTT CAT CT | 400-375 | 26 |
LIC15R (Mia2) | GGA GGA AAA GAA ACC AAC AG | 55-74 | 20 |
* LIC24R (Mia1) | GAA ACC AAC AGG GAT TG | 64-80 | 17 |
LIC2044 (Kau) | ACG CCT GCC TAC TCG CC | 26-42 | 17 |
IGS and 5S rDNA p rimer sequences | |||
5S RNA (VilU) | ATC AGA CGG GAT GCG GT | 17 | |
5S RNAR (VilU) | ACQ GCA TCC CGT CTG AT | 17 | |
NS1R | GAG ACA AGC ATA TGA CTA C | 38-20 (SSU) | 19 |
LR13R | GCA TTG TTG TTC CGA TG | 3448-3464(lsu) | 17 |
ITS and 5.8S rDNA primer sequences | |||
ITS1 (Whi) | TCC GTA GGT GAA CCT GCG G | 1769-1787(ssu) | 19 |
ITS1F (Gad) | CTT GGT CAT TTA GAG GAA GTA A | 22 | |
ITS2 (Whi) | GCT GCG TTC TTC ATCG ATG C (sim. to 5.8S) | 20 | |
ITS3 (Whi) | GCA TCG ATG AAG AAC GCA GC (sim. to 5.8SR) | 20 | |
ITS4 (Whi) | TCC TCC GCT TAT TGA TAT GC | 60-41(lsu) | 20 |
ITS4B (Gad) | CAG GAG ACT TGT ACA CGG TCC AG | 23 | |
ITS4S (Kre) | CCT CCG CTT ATT GAT ATG CTT AAG | 59-36 (lsu) | 24 |
ITS5 (Whi) | GGA AGT AAA AGT CGT AAC AAG G (sim. to SR6R) | 1745-1766(ssu) | 22 |
ITS5R | CCT TGT TAC GAC TTT TAC TTC C | 1766-1745 (ssu) | 22 |
5.8S (Vil0) | CGC TGC GTT CTT CAT CG | 17 | |
5.8SR (Vil0) | TCG ATG AAG AAC GCA GC | 18 | |
SR6R (VilU) | AAG TAP AAG TCG TAA CAA GG | 1747-1766(ssu) | 20 |
LR1 (Vil0) | GGT TGG TTT CTT TTC CT | 73-57(lsu) | 17 |
SLG-1 (Gro) | TTG CGC AAC CTG CGG AAG GAT | 1773-1793(ssu) | 21 |
NS24R | TAA AAG TCG TAA CAA GGT TT | 1750-1769(ssu) | 20 |